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Imported Upstream version 0.1.18
[samtools.git]
/
bcftools
/
bcf.h
diff --git
a/bcftools/bcf.h
b/bcftools/bcf.h
index aeae6ca0de411f198f4ff76d7c29f99a19f54448..822ae5cf80fd7f9dc375259524935c933f088323 100644
(file)
--- a/
bcftools/bcf.h
+++ b/
bcftools/bcf.h
@@
-28,7
+28,7
@@
#ifndef BCF_H
#define BCF_H
#ifndef BCF_H
#define BCF_H
-#define BCF_VERSION "0.1.17 (r973:277)"
+#define BCF_VERSION "0.1.17
-dev
(r973:277)"
#include <stdint.h>
#include <zlib.h>
#include <stdint.h>
#include <zlib.h>
@@
-154,6
+154,8
@@
extern "C" {
int bcf_fix_pl(bcf1_t *b);
// convert PL to GLF-like 10-likelihood GL
int bcf_gl10(const bcf1_t *b, uint8_t *gl);
int bcf_fix_pl(bcf1_t *b);
// convert PL to GLF-like 10-likelihood GL
int bcf_gl10(const bcf1_t *b, uint8_t *gl);
+ // convert up to 4 INDEL alleles to GLF-like 10-likelihood GL
+ int bcf_gl10_indel(const bcf1_t *b, uint8_t *gl);
// string hash table
void *bcf_build_refhash(bcf_hdr_t *h);
// string hash table
void *bcf_build_refhash(bcf_hdr_t *h);