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Uploading samtools_0.1.17-1_amd64.changes.
[samtools.git]
/
bcftools
/
bcf.h
diff --git
a/bcftools/bcf.h
b/bcftools/bcf.h
index f545a916879ee9f527c3e12b622926dfaf96971b..aeae6ca0de411f198f4ff76d7c29f99a19f54448 100644
(file)
--- a/
bcftools/bcf.h
+++ b/
bcftools/bcf.h
@@
-28,6
+28,8
@@
#ifndef BCF_H
#define BCF_H
#ifndef BCF_H
#define BCF_H
+#define BCF_VERSION "0.1.17 (r973:277)"
+
#include <stdint.h>
#include <zlib.h>
#include <stdint.h>
#include <zlib.h>
@@
-146,6
+148,12
@@
extern "C" {
int bcf_is_indel(const bcf1_t *b);
bcf_hdr_t *bcf_hdr_subsam(const bcf_hdr_t *h0, int n, char *const* samples, int *list);
int bcf_subsam(int n_smpl, int *list, bcf1_t *b);
int bcf_is_indel(const bcf1_t *b);
bcf_hdr_t *bcf_hdr_subsam(const bcf_hdr_t *h0, int n, char *const* samples, int *list);
int bcf_subsam(int n_smpl, int *list, bcf1_t *b);
+ // move GT to the first FORMAT field
+ int bcf_fix_gt(bcf1_t *b);
+ // update PL generated by old samtools
+ int bcf_fix_pl(bcf1_t *b);
+ // convert PL to GLF-like 10-likelihood GL
+ int bcf_gl10(const bcf1_t *b, uint8_t *gl);
// string hash table
void *bcf_build_refhash(bcf_hdr_t *h);
// string hash table
void *bcf_build_refhash(bcf_hdr_t *h);