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Imported Upstream version 0.1.11
[samtools.git]
/
bcftools
/
bcftools.1
diff --git
a/bcftools/bcftools.1
b/bcftools/bcftools.1
index ebff30134002500216c18a1e9eeee3e8a8dba8a8..6c7403bea6b8b6ebde3c77a8a1ef55ee890fcd59 100644
(file)
--- a/
bcftools/bcftools.1
+++ b/
bcftools/bcftools.1
@@
-74,6
+74,11
@@
Skip sites where the REF field is not A/C/G/T
.B -Q
Output the QCALL likelihood format
.TP
.B -Q
Output the QCALL likelihood format
.TP
+.B -f
+Reference-free variant calling mode. In this mode, the prior will be
+folded; a variant is called iff the sample(s) contains at least two
+alleles; the QUAL field in the VCF/BCF output is changed accordingly.
+.TP
.BI "-1 " INT
Number of group-1 samples. This option is used for dividing input into
two groups for comparing. A zero value disables this functionality. [0]
.BI "-1 " INT
Number of group-1 samples. This option is used for dividing input into
two groups for comparing. A zero value disables this functionality. [0]