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Imported Upstream version 0.1.13
[samtools.git]
/
bcftools
/
ld.c
diff --git
a/bcftools/ld.c
b/bcftools/ld.c
index dc84d4b02d836f0a07a0736588dd1142485d10cf..11474ed422aa40e5b839831a5c0b5ab80f5c73ad 100644
(file)
--- a/
bcftools/ld.c
+++ b/
bcftools/ld.c
@@
-70,7
+70,7
@@
double bcf_ld_freq(const bcf1_t *b0, const bcf1_t *b1, double f[4])
for (i = 0; i < n_smpl; ++i) {
const uint8_t *pi = PL[j] + i * PL_len[j];
double *p = pdg[j] + i * 3;
for (i = 0; i < n_smpl; ++i) {
const uint8_t *pi = PL[j] + i * PL_len[j];
double *p = pdg[j] + i * 3;
- p[0] = g_q2p[pi[
b[j]->n_alleles
]]; p[1] = g_q2p[pi[1]]; p[2] = g_q2p[pi[0]];
+ p[0] = g_q2p[pi[
2
]]; p[1] = g_q2p[pi[1]]; p[2] = g_q2p[pi[0]];
}
}
// iteration
}
}
// iteration