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Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
[samtools.git]
/
bcftools
/
prob1.h
diff --git
a/bcftools/prob1.h
b/bcftools/prob1.h
index 571f42f1c63f5e93a4d1b601bd4843f7e1a48483..0a51a0ae2650f377f4fc48665109487687eb69cb 100644
(file)
--- a/
bcftools/prob1.h
+++ b/
bcftools/prob1.h
@@
-8,9
+8,10
@@
typedef struct __bcf_p1aux_t bcf_p1aux_t;
typedef struct {
int rank0, perm_rank; // NB: perm_rank is always set to -1 by bcf_p1_cal()
typedef struct {
int rank0, perm_rank; // NB: perm_rank is always set to -1 by bcf_p1_cal()
+ int ac; // ML alternative allele count
double f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var;
double cil, cih;
double f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var;
double cil, cih;
- double cmp[3], p_chi2; // used by contrast2()
+ double cmp[3], p_chi2
, lrt
; // used by contrast2()
} bcf_p1rst_t;
#define MC_PTYPE_FULL 1
} bcf_p1rst_t;
#define MC_PTYPE_FULL 1
@@
-32,7
+33,7
@@
extern "C" {
int bcf_p1_set_n1(bcf_p1aux_t *b, int n1);
void bcf_p1_set_folded(bcf_p1aux_t *p1a); // only effective when set_n1() is not called
int bcf_p1_set_n1(bcf_p1aux_t *b, int n1);
void bcf_p1_set_folded(bcf_p1aux_t *p1a); // only effective when set_n1() is not called
- int bcf_em1(const bcf1_t *b, int n1, int flag, double x[
9
]);
+ int bcf_em1(const bcf1_t *b, int n1, int flag, double x[
10
]);
#ifdef __cplusplus
}
#ifdef __cplusplus
}