Copied from SVN revision 4710 and adapted to Git.

[samtools.git] / bgzip.c

diff --git a/bgzip.c b/bgzip.c
index c58d55d193c7daf7378f6a763ee5664f6f71461e..ac2a98ea35eb2503d94652918054575b341f5cc1 100644 (file)
--- a/bgzip.c
+++ b/bgzip.c
@@ -1,13 +1,26 @@
-/*
- * The Broad Institute
- * SOFTWARE COPYRIGHT NOTICE AGREEMENT
- * This software and its documentation are copyright 2008 by the
- * Broad Institute/Massachusetts Institute of Technology. All rights are reserved.
- *
- * This software is supplied without any warranty or guaranteed support whatsoever.
- * Neither the Broad Institute nor MIT can be responsible for its use, misuse,
- * or functionality.
- */
+/* The MIT License
+
+   Copyright (c) 2008 Broad Institute / Massachusetts Institute of Technology
+
+   Permission is hereby granted, free of charge, to any person obtaining a copy
+   of this software and associated documentation files (the "Software"), to deal
+   in the Software without restriction, including without limitation the rights
+   to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+   copies of the Software, and to permit persons to whom the Software is
+   furnished to do so, subject to the following conditions:
+
+   The above copyright notice and this permission notice shall be included in
+   all copies or substantial portions of the Software.
+
+   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+   IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+   FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+   AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+   LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+   OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+   THE SOFTWARE.
+*/
+
 #include <stdlib.h>
 #include <string.h>
 #include <stdio.h>
@@ -37,7 +50,7 @@ static int write_open(const char *fn, int is_forced)
        int fd = -1;
        char c;
        if (!is_forced) {
-               if ((fd = open(fn, O_WRONLY | O_CREAT | O_TRUNC | O_EXCL, 0644)) < 0 && errno == EEXIST) {
+               if ((fd = open(fn, O_WRONLY | O_CREAT | O_TRUNC | O_EXCL, 0666)) < 0 && errno == EEXIST) {
                        printf("bgzip: %s already exists; do you wish to overwrite (y or n)? ", fn);
                        scanf("%c", &c);
                        if (c != 'Y' && c != 'y') {
@@ -47,7 +60,7 @@ static int write_open(const char *fn, int is_forced)
                }
        }
        if (fd < 0) {
-               if ((fd = open(fn, O_WRONLY | O_CREAT | O_TRUNC, 0644)) < 0) {
+               if ((fd = open(fn, O_WRONLY | O_CREAT | O_TRUNC, 0666)) < 0) {
                        fprintf(stderr, "bgzip: %s: Fail to write\n", fn);
                        exit(1);
                }