bcftools.1 and samtools.1 were merged in upstream release 0.1.17.

[samtools.git] / debian / rules

diff --git a/debian/rules b/debian/rules
index ac35c570acc45407aba80341e83751426b706ba5..93bf3aa3c1166305dfd02400d4dfe366ec9d2f79 100755 (executable)
--- a/debian/rules
+++ b/debian/rules
@@ -8,5 +8,14 @@ CFLAGS += -fPIC
 DEB_MAKE_BUILD_TARGET = all all-recur razip lib
 DEB_MAKE_CHECK_TARGET = -C examples all
 
+DEB_DH_BUILDDEB_ARGS = -- -Z=bzip2
+
 clean::
-       $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg
+       $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf
+
+binary-install/samtools::
+       install -m 644 bcftools/README $(CURDIR)/debian/samtools/usr/share/doc/samtools/README.bcftools
+       ln -s samtools.1.gz $(CURDIR)/debian/samtools/usr/share/man/man1/bcftools.1.gz
+
+binary-fixup/samtools::
+       sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py