Merge commit 'upstream/0.1.18'

[samtools.git] / errmod.h

diff --git a/errmod.h b/errmod.h
index e3e9a90540cee5a78bb603956db20e7861555c2d..32c07b67b625924230689fca1d16da4f49e5938b 100644 (file)
--- a/errmod.h
+++ b/errmod.h
@@ -12,6 +12,13 @@ typedef struct {
 
 errmod_t *errmod_init(float depcorr);
 void errmod_destroy(errmod_t *em);
+
+/*
+       n: number of bases
+       m: maximum base
+       bases[i]: qual:6, strand:1, base:4
+       q[i*m+j]: phred-scaled likelihood of (i,j)
+ */
 int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q);
 
 #endif