Imported Upstream version 0.1.7~dfsg
[samtools.git] / klist.h
diff --git a/klist.h b/klist.h
new file mode 100644 (file)
index 0000000..2f17016
--- /dev/null
+++ b/klist.h
@@ -0,0 +1,96 @@
+#ifndef _LH3_KLIST_H
+#define _LH3_KLIST_H
+
+#include <stdlib.h>
+
+#define KMEMPOOL_INIT(name, kmptype_t, kmpfree_f)                                              \
+       typedef struct {                                                                                                        \
+               size_t cnt, n, max;                                                                                             \
+               kmptype_t **buf;                                                                                                \
+       } kmp_##name##_t;                                                                                                       \
+       static inline kmp_##name##_t *kmp_init_##name() {                                       \
+               return calloc(1, sizeof(kmp_##name##_t));                                               \
+       }                                                                                                                                       \
+       static inline void kmp_destroy_##name(kmp_##name##_t *mp) {                     \
+               size_t k;                                                                                                               \
+               for (k = 0; k < mp->n; ++k) {                                                                   \
+                       kmpfree_f(mp->buf[k]); free(mp->buf[k]);                                        \
+               }                                                                                                                               \
+               free(mp->buf); free(mp);                                                                                \
+       }                                                                                                                                       \
+       static inline kmptype_t *kmp_alloc_##name(kmp_##name##_t *mp) {         \
+               ++mp->cnt;                                                                                                              \
+               if (mp->n == 0) return calloc(1, sizeof(kmptype_t));                    \
+               return mp->buf[--mp->n];                                                                                \
+       }                                                                                                                                       \
+       static inline void kmp_free_##name(kmp_##name##_t *mp, kmptype_t *p) { \
+               --mp->cnt;                                                                                                              \
+               if (mp->n == mp->max) {                                                                                 \
+                       mp->max = mp->max? mp->max<<1 : 16;                                                     \
+                       mp->buf = realloc(mp->buf, sizeof(void*) * mp->max);            \
+               }                                                                                                                               \
+               mp->buf[mp->n++] = p;                                                                                   \
+       }
+
+#define kmempool_t(name) kmp_##name##_t
+#define kmp_init(name) kmp_init_##name()
+#define kmp_destroy(name, mp) kmp_destroy_##name(mp)
+#define kmp_alloc(name, mp) kmp_alloc_##name(mp)
+#define kmp_free(name, mp, p) kmp_free_##name(mp, p)
+
+#define KLIST_INIT(name, kltype_t, kmpfree_t)                                                  \
+       struct __kl1_##name {                                                                                           \
+               kltype_t data;                                                                                                  \
+               struct __kl1_##name *next;                                                                              \
+       };                                                                                                                                      \
+       typedef struct __kl1_##name kl1_##name;                                                         \
+       KMEMPOOL_INIT(name, kl1_##name, kmpfree_t)                                                      \
+       typedef struct {                                                                                                        \
+               kl1_##name *head, *tail;                                                                                \
+               kmp_##name##_t *mp;                                                                                             \
+               size_t size;                                                                                                    \
+       } kl_##name##_t;                                                                                                        \
+       static inline kl_##name##_t *kl_init_##name() {                                         \
+               kl_##name##_t *kl = calloc(1, sizeof(kl_##name##_t));                   \
+               kl->mp = kmp_init(name);                                                                                \
+               kl->head = kl->tail = kmp_alloc(name, kl->mp);                                  \
+               kl->head->next = 0;                                                                                             \
+               return kl;                                                                                                              \
+       }                                                                                                                                       \
+       static inline void kl_destroy_##name(kl_##name##_t *kl) {                       \
+               kl1_##name *p;                                                                                                  \
+               for (p = kl->head; p != kl->tail; p = p->next)                                  \
+                       kmp_free(name, kl->mp, p);                                                                      \
+               kmp_free(name, kl->mp, p);                                                                              \
+               kmp_destroy(name, kl->mp);                                                                              \
+               free(kl);                                                                                                               \
+       }                                                                                                                                       \
+       static inline kltype_t *kl_pushp_##name(kl_##name##_t *kl) {            \
+               kl1_##name *q, *p = kmp_alloc(name, kl->mp);                                    \
+               q = kl->tail; p->next = 0; kl->tail->next = p; kl->tail = p;    \
+               ++kl->size;                                                                                                             \
+               return &q->data;                                                                                                \
+       }                                                                                                                                       \
+       static inline int kl_shift_##name(kl_##name##_t *kl, kltype_t *d) { \
+               kl1_##name *p;                                                                                                  \
+               if (kl->head->next == 0) return -1;                                                             \
+               --kl->size;                                                                                                             \
+               p = kl->head; kl->head = kl->head->next;                                                \
+               if (d) *d = p->data;                                                                                    \
+               kmp_free(name, kl->mp, p);                                                                              \
+               return 0;                                                                                                               \
+       }
+
+#define kliter_t(name) kl1_##name
+#define klist_t(name) kl_##name##_t
+#define kl_val(iter) ((iter)->data)
+#define kl_next(iter) ((iter)->next)
+#define kl_begin(kl) ((kl)->head)
+#define kl_end(kl) ((kl)->tail)
+
+#define kl_init(name) kl_init_##name()
+#define kl_destroy(name, kl) kl_destroy_##name(kl)
+#define kl_pushp(name, kl) kl_pushp_##name(kl)
+#define kl_shift(name, kl, d) kl_shift_##name(kl, d)
+
+#endif