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bcftools.1 and samtools.1 were merged in upstream release 0.1.17.
[samtools.git]
/
misc
/
Makefile
diff --git
a/misc/Makefile
b/misc/Makefile
index 4404cccd1e8169b1c3a40538099a4e9d9285cfa8..6c25c782eb4e2ad784563991bd69922e885737cb 100644
(file)
--- a/
misc/Makefile
+++ b/
misc/Makefile
@@
-1,6
+1,6
@@
CC= gcc
CXX= g++
CC= gcc
CXX= g++
-CFLAGS= -g -Wall -O2 -m64 #-arch ppc
+CFLAGS= -g -Wall -O2
#
-m64 #-arch ppc
CXXFLAGS= $(CFLAGS)
DFLAGS= -D_FILE_OFFSET_BITS=64
OBJS=
CXXFLAGS= $(CFLAGS)
DFLAGS= -D_FILE_OFFSET_BITS=64
OBJS=
@@
-27,6
+27,9
@@
lib-recur all-recur clean-recur cleanlocal-recur install-recur:
lib:
lib:
+afs2:afs2.o
+ $(CC) $(CFLAGS) -o $@ afs2.o -lm -lz -L.. -lbam
+
wgsim:wgsim.o
$(CC) $(CFLAGS) -o $@ wgsim.o -lm
wgsim:wgsim.o
$(CC) $(CFLAGS) -o $@ wgsim.o -lm
@@
-48,7
+51,10
@@
maq2sam-long:maq2sam.c
md5fa.o:md5.h md5fa.c
$(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
md5fa.o:md5.h md5fa.c
$(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
+afs2.o:afs2.c ../bam.h
+ $(CC) $(CFLAGS) -c -I.. -o $@ afs2.c
+
cleanlocal:
cleanlocal:
- rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a
+ rm -fr gmon.out *.o a.out *.
exe *.
dSYM $(PROG) *~ *.a
clean:cleanlocal-recur
clean:cleanlocal-recur