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Mention ‘SAMtools’ in libbam-dev's description, to make it easier to find with apt...
[samtools.git]
/
misc
/
Makefile
diff --git
a/misc/Makefile
b/misc/Makefile
index 2d7139d4e8a5c62068afb381f47493f8408bc681..d2f8bd8ea56c74709f4f0d426787db3cd6c52dd9 100644
(file)
--- a/
misc/Makefile
+++ b/
misc/Makefile
@@
-1,10
+1,10
@@
CC= gcc
CXX= g++
CC= gcc
CXX= g++
-CFLAGS= -g -Wall
#
-O2 #-m64 #-arch ppc
+CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
CXXFLAGS= $(CFLAGS)
DFLAGS= -D_FILE_OFFSET_BITS=64
OBJS=
CXXFLAGS= $(CFLAGS)
DFLAGS= -D_FILE_OFFSET_BITS=64
OBJS=
-PROG= md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
+PROG= md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
seqtk
INCLUDES= -I..
SUBDIRS= .
INCLUDES= -I..
SUBDIRS= .
@@
-27,11
+27,11
@@
lib-recur all-recur clean-recur cleanlocal-recur install-recur:
lib:
lib:
-
afs2:afs2
.o
- $(CC) $(CFLAGS) -o $@
afs2.o -lm -lz -L.. -lbam
+
seqtk:seqtk
.o
+ $(CC) $(CFLAGS) -o $@
seqtk.o -lm -lz
wgsim:wgsim.o
wgsim:wgsim.o
- $(CC) $(CFLAGS) -o $@ wgsim.o -lm
+ $(CC) $(CFLAGS) -o $@ wgsim.o -lm
-lz
md5fa:md5.o md5fa.o md5.h ../kseq.h
$(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz
md5fa:md5.o md5fa.o md5.h ../kseq.h
$(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz
@@
-51,8
+51,11
@@
maq2sam-long:maq2sam.c
md5fa.o:md5.h md5fa.c
$(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
md5fa.o:md5.h md5fa.c
$(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
-afs2.o:afs2.c ../bam.h
- $(CC) $(CFLAGS) -c -I.. -o $@ afs2.c
+seqtk.o:seqtk.c ../khash.h ../kseq.h
+ $(CC) $(CFLAGS) -c -I.. -o $@ seqtk.c
+
+wgsim.o:wgsim.c ../kseq.h
+ $(CC) $(CFLAGS) -c -I.. -o $@ wgsim.c
cleanlocal:
rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a
cleanlocal:
rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a