Imported Upstream version 0.1.18

[samtools.git] / misc / Makefile

diff --git a/misc/Makefile b/misc/Makefile
index 6c25c782eb4e2ad784563991bd69922e885737cb..d2f8bd8ea56c74709f4f0d426787db3cd6c52dd9 100644 (file)
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -4,7 +4,7 @@ CFLAGS=         -g -Wall -O2 #-m64 #-arch ppc
 CXXFLAGS=      $(CFLAGS)
 DFLAGS=                -D_FILE_OFFSET_BITS=64
 OBJS=          
-PROG=          md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
+PROG=          md5sum-lite md5fa maq2sam-short maq2sam-long wgsim seqtk
 INCLUDES=      -I..
 SUBDIRS=       .
 
@@ -27,11 +27,11 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 
 lib:
 
-afs2:afs2.o
-               $(CC) $(CFLAGS) -o $@ afs2.o -lm -lz -L.. -lbam
+seqtk:seqtk.o
+               $(CC) $(CFLAGS) -o $@ seqtk.o -lm -lz
 
 wgsim:wgsim.o
-               $(CC) $(CFLAGS) -o $@ wgsim.o -lm
+               $(CC) $(CFLAGS) -o $@ wgsim.o -lm -lz
 
 md5fa:md5.o md5fa.o md5.h ../kseq.h
                $(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz
@@ -51,8 +51,11 @@ maq2sam-long:maq2sam.c
 md5fa.o:md5.h md5fa.c
                $(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
 
-afs2.o:afs2.c ../bam.h
-               $(CC) $(CFLAGS) -c -I.. -o $@ afs2.c
+seqtk.o:seqtk.c ../khash.h ../kseq.h
+               $(CC) $(CFLAGS) -c -I.. -o $@ seqtk.c
+
+wgsim.o:wgsim.c ../kseq.h
+               $(CC) $(CFLAGS) -c -I.. -o $@ wgsim.c
 
 cleanlocal:
                rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a