X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=Makefile;h=4fc03d55ac2ac510be80e6f3817f82ce5584b92a;hp=af93d9ca5fb9010943877317bdb64b88d65e4ea1;hb=9f4bebab2e0917c676ae739b2d05cb22ad6c4ed5;hpb=1539c893f863596db71ab2af75a802e935496940

diff --git a/Makefile b/Makefile
index af93d9c..4fc03d5 100644
--- a/Makefile
+++ b/Makefile
@@ -3,12 +3,12 @@ CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
 DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
 KNETFILE_O=	knetfile.o
 LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\
-			bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o \
-			$(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o kprobaln.o
+			bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o bedidx.o \
+			$(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o
 AOBJS=		bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o	\
 			bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o	\
 			bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
-			cut_target.o phase.o
+			cut_target.o phase.o bam2depth.o
 PROG=		samtools
 INCLUDES=	-I.
 SUBDIRS=	. bcftools misc