X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=Makefile;h=7569e27131c81a6c56d713d9a4e79951e63b6c25;hp=db183330d1fb76ce4fa0d17d8dab65afdfbeb65a;hb=0dc732a62db94bbd7b88c2c8f6992f367c792600;hpb=2b0bb2474587f6e2f2c03c34c3f5882905c60bcc

diff --git a/Makefile b/Makefile
index db18333..7569e27 100644
--- a/Makefile
+++ b/Makefile
@@ -8,7 +8,7 @@ LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\
 AOBJS=		bam_tview.o bam_plcmd.o sam_view.o	\
 			bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o	\
 			bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
-			cut_target.o phase.o bam2depth.o
+			cut_target.o phase.o bam2depth.o bam_calnh.o
 PROG=		samtools
 INCLUDES=	-I.
 SUBDIRS=	. bcftools misc
@@ -49,6 +49,10 @@ razip:razip.o razf.o $(KNETFILE_O)
 bgzip:bgzip.o bgzf.o $(KNETFILE_O)
 		$(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o $(KNETFILE_O) -lz
 
+bam_calnh:lib-recur $(AOBJS)
+		rm -fr bam_calnh.o; \
+		$(CC) $(CFLAGS) -D_STANDALONE -o $@ bam_calnh.c -lbam -lm
+
 razip.o:razf.h
 bam.o:bam.h razf.h bam_endian.h kstring.h sam_header.h
 sam.o:sam.h bam.h