X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=NEWS;h=478e718c79963a052e682bbc33cfa0de695076e0;hp=6c2195e5929fab1dbe96b5fafc734a62443ec99c;hb=6a0c6f060a60789b48e10a72b1381f6e54599302;hpb=e3b3a0177339fb8c099346986e965e3bd5b85999

diff --git a/NEWS b/NEWS
index 6c2195e..478e718 100644
--- a/NEWS
+++ b/NEWS
@@ -1,3 +1,34 @@
+Beta release 0.1.11 (21 November, 2010)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+This is mainly a bug fix release:
+
+ * Fixed a bug in random retrieval (since 0.1.8). It occurs when reads
+   are retrieved from a small region containing no reads.
+
+ * Fixed a bug in pileup (since 0.1.9). The bug causes an assertion
+   failure when the first CIGAR operation is a deletion.
+
+ * Improved fault tolerence in remote access.
+
+One minor feature has been implemented in bcftools:
+
+ * Added a reference-free variant calling mode. In this mode, a site is
+   regarded as a variat iff the sample(s) contains two or more alleles;
+   the meaning of the QUAL field in the VCF output is changed
+   accordingly. Effectively, the reference allele is irrelevant to the
+   result in the new mode, although the reference sequence has to be
+   used in realignment when SAMtools computes genotype likelihoods.
+
+In addition, since 0.1.10, the `pileup' command has been deprecated by
+`mpileup' which is more powerful and more accurate. The `pileup' command
+will not be removed in the next few releases, but new features will not
+be added.
+
+(0.1.11: 21 November 2010, r851)
+
+
+
 Beta Release 0.1.10 (16 November, 2010)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~