X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=NEWS;h=8e0ba351ba15c148491119e45b2c1531ded6f66c;hp=149c090c08bc9724d677dce8a66ddf62a83da66b;hb=4a17fa7e1f91b2fe04ad334a63fc2b0d5e859d8a;hpb=b27e00385f41769d03a8cca4dbd71275fc9fa906

diff --git a/NEWS b/NEWS
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--- a/NEWS
+++ b/NEWS
@@ -1,3 +1,54 @@
+Beta Release 0.1.6 (2 September, 2009)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Notable changes:
+
+ * In tview, do not show a blank screen when no reads mapped to the
+   corresponding region.
+
+ * Implemented native HTTP support in the BGZF library. Samtools is now
+   able to directly open a BAM file on HTTP. HTTP proxy is also
+   supported via the "http_proxy" environmental variable.
+
+ * Samtools is now compitable with the MinGW (win32) compiler and the
+   PDCurses library.
+
+ * The calmd (or fillmd) command now calculates the NM tag and replaces
+   MD tags if they are wrong.
+
+ * The view command now recognizes and optionally prints FLAG in HEXs or
+   strings to make a SAM file more friendly to human eyes. This is a
+   samtools-C extension, not implemented in Picard for the time
+   being. Please type `samtools view -?' for more information.
+
+ * BAM files now have an end-of-file (EOF) marker to facilitate
+   truncation detection. A warning will be given if an on-disk BAM file
+   does not have this marker. The warning will be seen on BAM files
+   generated by an older version of samtools. It does NO harm.
+
+ * New key bindings in tview: `r' to show read names and `s' to show
+   reference skip (N operation) as deletions.
+
+ * Fixed a bug in `samtools merge -n'.
+
+ * Samtools merge now optionally copies the header of a user specified
+   SAM file to the resultant BAM output.
+
+ * Samtools pileup/tview works with a CIGAR with the first or the last
+   operation is an indel.
+
+ * Fixed a bug in bam_aux_get().
+
+
+Changes in other utilies:
+
+ * Fixed wrong FLAG in maq2sam.
+
+
+(0.1.6: 2 September 2009, r453)
+
+
+
 Beta Release 0.1.5 (7 July, 2009)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~