X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam.c;h=96aace21c7ab7c261380ee2136e283022e9c834d;hp=521c1dda7897aa2b4489b103e1ee1a84129d6c63;hb=ced7709f121a00d5049d99ee8576037994aab1d1;hpb=8d2494d1fb7cd0fa7c63be5ffba8dd1a11457522 diff --git a/bam.c b/bam.c index 521c1dd..96aace2 100644 --- a/bam.c +++ b/bam.c @@ -79,7 +79,7 @@ bam_header_t *bam_header_read(bamFile fp) // with ESPIPE. Suppress the error message in this case. if (errno != ESPIPE) perror("[bam_header_read] bgzf_check_EOF"); } - else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent.\n"); + else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent. The input is probably truncated.\n"); // read "BAM1" magic_len = bam_read(fp, buf, 4); if (magic_len != 4 || strncmp(buf, "BAM\001", 4) != 0) {