X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam.c;h=a65aed5d551053a50952e95d58a763a77fadd06e;hp=521c1dda7897aa2b4489b103e1ee1a84129d6c63;hb=e42445c748ed193f8d0a4277a844fa848f30c132;hpb=8d2494d1fb7cd0fa7c63be5ffba8dd1a11457522

diff --git a/bam.c b/bam.c
index 521c1dd..a65aed5 100644
--- a/bam.c
+++ b/bam.c
@@ -7,7 +7,7 @@
 #include "kstring.h"
 #include "sam_header.h"
 
-int bam_is_be = 0;
+int bam_is_be = 0, bam_verbose = 2;
 char *bam_flag2char_table = "pPuUrR12sfd\0\0\0\0\0";
 
 /**************************
@@ -79,7 +79,7 @@ bam_header_t *bam_header_read(bamFile fp)
 		// with ESPIPE.  Suppress the error message in this case.
 		if (errno != ESPIPE) perror("[bam_header_read] bgzf_check_EOF");
 	}
-	else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent.\n");
+	else if (i == 0) fprintf(stderr, "[bam_header_read] EOF marker is absent. The input is probably truncated.\n");
 	// read "BAM1"
 	magic_len = bam_read(fp, buf, 4);
 	if (magic_len != 4 || strncmp(buf, "BAM\001", 4) != 0) {