X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam.h;h=346c750c8c807c44ea32804eeb1bb93411d0b71a;hp=246b020d679a07f073cfbae8dc40a8d57b501d25;hb=58ef643243f8e017d859c9fb27ba8a5f3f4517c0;hpb=b301e959d73eee0955c57004f344f17af00703f4

diff --git a/bam.h b/bam.h
index 246b020..346c750 100644
--- a/bam.h
+++ b/bam.h
@@ -40,7 +40,7 @@
   @copyright Genome Research Ltd.
  */
 
-#define BAM_VERSION "0.1.17 (r973:277)"
+#define BAM_VERSION "0.1.18 (r982:295)"
 
 #include <stdint.h>
 #include <stdlib.h>
@@ -134,20 +134,25 @@ typedef struct {
 /*
   CIGAR operations.
  */
-/*! @abstract CIGAR: match */
+/*! @abstract CIGAR: M = match or mismatch*/
 #define BAM_CMATCH      0
-/*! @abstract CIGAR: insertion to the reference */
+/*! @abstract CIGAR: I = insertion to the reference */
 #define BAM_CINS        1
-/*! @abstract CIGAR: deletion from the reference */
+/*! @abstract CIGAR: D = deletion from the reference */
 #define BAM_CDEL        2
-/*! @abstract CIGAR: skip on the reference (e.g. spliced alignment) */
+/*! @abstract CIGAR: N = skip on the reference (e.g. spliced alignment) */
 #define BAM_CREF_SKIP   3
-/*! @abstract CIGAR: clip on the read with clipped sequence present in qseq */
+/*! @abstract CIGAR: S = clip on the read with clipped sequence
+  present in qseq */
 #define BAM_CSOFT_CLIP  4
-/*! @abstract CIGAR: clip on the read with clipped sequence trimmed off */
+/*! @abstract CIGAR: H = clip on the read with clipped sequence trimmed off */
 #define BAM_CHARD_CLIP  5
-/*! @abstract CIGAR: padding */
+/*! @abstract CIGAR: P = padding */
 #define BAM_CPAD        6
+/*! @abstract CIGAR: equals = match */
+#define BAM_CEQUAL        7
+/*! @abstract CIGAR: X = mismatch */
+#define BAM_CDIFF        8
 
 /*! @typedef
   @abstract Structure for core alignment information.