X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam.h;h=87e3de326fea144e10323ad8229309b6b31136a4;hp=eef2ea9853f25966c5a40c45a86272b78a507fb2;hb=0242bdf14e88f1058887598cbf898c0d0af01a82;hpb=016b50ab60e879a0b8f81cb76ce11ea360a03d4a diff --git a/bam.h b/bam.h index eef2ea9..87e3de3 100644 --- a/bam.h +++ b/bam.h @@ -33,13 +33,15 @@ BAM library provides I/O and various operations on manipulating files in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) - format. It now supports importing from or exporting to TAM, sorting, + format. It now supports importing from or exporting to SAM, sorting, merging, generating pileup, and quickly retrieval of reads overlapped with a specified region. @copyright Genome Research Ltd. */ +#define BAM_VERSION "0.1.15 (r949:203)" + #include #include #include @@ -262,6 +264,12 @@ typedef struct __bam_iter_t *bam_iter_t; */ extern int bam_is_be; +/*! + @abstract Verbose level between 0 and 3; 0 is supposed to disable all + debugging information, though this may not have been implemented. + */ +extern int bam_verbose; + /*! @abstract Table for converting a nucleotide character to the 4-bit encoding. */ extern unsigned char bam_nt16_table[256];