X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam2bcf.h;h=4af080c4753b2070192bec5e04e16174ca5bb5f8;hp=958567241936a4c54feae501c725ad77a6e3f1be;hb=0f906dafb2ad22371a753557562ef95c3034480d;hpb=b301e959d73eee0955c57004f344f17af00703f4

diff --git a/bam2bcf.h b/bam2bcf.h
index 9585672..4af080c 100644
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -26,6 +26,7 @@ typedef struct {
 	int depth, ori_depth, qsum[4];
 	int anno[16];
 	float p[25];
+    int mvd[3]; // mean variant distance, number of variant reads, average read length
 } bcf_callret1_t;
 
 typedef struct {
@@ -33,6 +34,7 @@ typedef struct {
 	int n, n_alleles, shift, ori_ref, unseen;
 	int anno[16], depth, ori_depth;
 	uint8_t *PL;
+    float vdb; // variant distance bias
 } bcf_call_t;
 
 #ifdef __cplusplus