X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam_maqcns.c;h=99310362afa0dfa216b7b678b04f2d69d2103150;hp=4fbc6c6d0cd14f54ac7d75f07f789cbdb73e4362;hb=ced7709f121a00d5049d99ee8576037994aab1d1;hpb=e3b3a0177339fb8c099346986e965e3bd5b85999 diff --git a/bam_maqcns.c b/bam_maqcns.c index 4fbc6c6..9931036 100644 --- a/bam_maqcns.c +++ b/bam_maqcns.c @@ -22,8 +22,6 @@ typedef struct { uint32_t c[4]; } glf_call_aux_t; -char bam_nt16_nt4_table[] = { 4, 0, 1, 4, 2, 4, 4, 4, 3, 4, 4, 4, 4, 4, 4, 4 }; - /* P() = \theta \sum_{i=1}^{N-1} 1/i P(D|) = \sum_{k=1}^{N-1} p_k 1/2 [(k/N)^n_2(1-k/N)^n_1 + (k/N)^n1(1-k/N)^n_2]