X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam_maqcns.h;h=2a82aeee8057f5992570d0896a1621b9116057cd;hp=36704d7bce51104e1a8d73ed233f8ebd4b8ce582;hb=4a17fa7e1f91b2fe04ad334a63fc2b0d5e859d8a;hpb=b27e00385f41769d03a8cca4dbd71275fc9fa906

diff --git a/bam_maqcns.h b/bam_maqcns.h
index 36704d7..2a82aee 100644
--- a/bam_maqcns.h
+++ b/bam_maqcns.h
@@ -24,7 +24,8 @@ typedef struct {
 
 typedef struct {
 	int indel1, indel2;
-	int cnt1, cnt2, cnt_ambi, cnt_anti;
+	int cnt1, cnt2, cnt_anti;
+	int cnt_ref, cnt_ambi;
 	char *s[2];
 	//
 	int gt, gl[2];