X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bam_rmdup.c;h=5da946011f10ec72758c18cc10af75180a7d8f4e;hp=1fa6cad5d7582b9b7a1d148c47df4e00aa5b638e;hb=4a17fa7e1f91b2fe04ad334a63fc2b0d5e859d8a;hpb=b27e00385f41769d03a8cca4dbd71275fc9fa906

diff --git a/bam_rmdup.c b/bam_rmdup.c
index 1fa6cad..5da9460 100644
--- a/bam_rmdup.c
+++ b/bam_rmdup.c
@@ -128,7 +128,8 @@ int bam_rmdup(int argc, char *argv[])
 {
 	bamFile in, out;
 	if (argc < 3) {
-		fprintf(stderr, "Usage: samtools rmdup <input.srt.bam> <output.bam>\n");
+		fprintf(stderr, "Usage: samtools rmdup <input.srt.bam> <output.bam>\n\n");
+		fprintf(stderr, "Note: Picard is recommended for this task.\n");
 		return 1;
 	}
 	in = (strcmp(argv[1], "-") == 0)? bam_dopen(fileno(stdin), "r") : bam_open(argv[1], "r");