X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bcftools%2FMakefile;h=9b6f8633101cab4ccd8697d489c36091cd808892;hp=e579a9e2404a4a4359802f91cbdad1b0a1cbf09e;hb=58ef643243f8e017d859c9fb27ba8a5f3f4517c0;hpb=c34624801b980425af68c3c431423c72b18c14fe

diff --git a/bcftools/Makefile b/bcftools/Makefile
index e579a9e..9b6f863 100644
--- a/bcftools/Makefile
+++ b/bcftools/Makefile
@@ -1,9 +1,9 @@
 CC=			gcc
 CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
 DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
-LOBJS=		bcf.o vcf.o bcfutils.o prob1.o ld.o kfunc.o index.o fet.o bcf2qcall.o
+LOBJS=		bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o
 OMISC=		..
-AOBJS=		call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
+AOBJS=		call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o $(OMISC)/bedidx.o
 PROG=		bcftools
 INCLUDES=	
 SUBDIRS=	.
@@ -28,7 +28,7 @@ all:$(PROG)
 lib:libbcf.a
 
 libbcf.a:$(LOBJS)
-		$(AR) -cru $@ $(LOBJS)
+		$(AR) -csru $@ $(LOBJS)
 
 bcftools:lib $(AOBJS)
 		$(CC) $(CFLAGS) -o $@ $(AOBJS) -L. $(LIBPATH) -lbcf -lm -lz