X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bcftools%2FMakefile;h=b5a1b1bf6fdefcb7431d93c9890e31606cd25505;hp=8b890ba67e7ca5146bfc05e533884f52bc8d371a;hb=e42445c748ed193f8d0a4277a844fa848f30c132;hpb=8d2494d1fb7cd0fa7c63be5ffba8dd1a11457522

diff --git a/bcftools/Makefile b/bcftools/Makefile
index 8b890ba..b5a1b1b 100644
--- a/bcftools/Makefile
+++ b/bcftools/Makefile
@@ -3,7 +3,7 @@ CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
 DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
 LOBJS=		bcf.o vcf.o bcfutils.o prob1.o ld.o kfunc.o index.o fet.o bcf2qcall.o
 OMISC=		..
-AOBJS=		call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
+AOBJS=		call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o $(OMISC)/bedidx.o
 PROG=		bcftools
 INCLUDES=	
 SUBDIRS=	.
@@ -31,7 +31,7 @@ libbcf.a:$(LOBJS)
 		$(AR) -cru $@ $(LOBJS)
 
 bcftools:lib $(AOBJS)
-		$(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) -lz -L. -lbcf
+		$(CC) $(CFLAGS) -o $@ $(AOBJS) -L. $(LIBPATH) -lbcf -lm -lz
 
 bcf.o:bcf.h
 vcf.o:bcf.h