X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bcftools%2Fbcf.c;h=6e45695cfb8c35a22dc4699728e445129293a699;hp=fd5c0c9ae24971f15168f488452afe2077258dd0;hb=f2f3968e11eead9ce5601b01890bc2339ff951e9;hpb=6a0c6f060a60789b48e10a72b1381f6e54599302

diff --git a/bcftools/bcf.c b/bcftools/bcf.c
index fd5c0c9..6e45695 100644
--- a/bcftools/bcf.c
+++ b/bcftools/bcf.c
@@ -181,7 +181,7 @@ int bcf_read(bcf_t *bp, const bcf_hdr_t *h, bcf1_t *b)
 	}
 	bgzf_read(bp->fp, b->str, b->l_str);
 	l = 12 + b->l_str;
-	bcf_sync(b);
+	if (bcf_sync(b) < 0) return -2;
 	for (i = 0; i < b->n_gi; ++i) {
 		bgzf_read(bp->fp, b->gi[i].data, b->gi[i].len * h->n_smpl);
 		l += b->gi[i].len * h->n_smpl;