X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=bcftools%2Fprob1.h;h=b4f6a304ae49ff31f9ef9ae88db268cd3f01640e;hp=7158fe29f89bee73dda2f2bdc9426af038a363c6;hb=1539c893f863596db71ab2af75a802e935496940;hpb=8d2494d1fb7cd0fa7c63be5ffba8dd1a11457522

diff --git a/bcftools/prob1.h b/bcftools/prob1.h
index 7158fe2..b4f6a30 100644
--- a/bcftools/prob1.h
+++ b/bcftools/prob1.h
@@ -8,7 +8,8 @@ typedef struct __bcf_p1aux_t bcf_p1aux_t;
 
 typedef struct {
 	int rank0;
-	double f_em, f_exp, f_flat, p_ref;
+	double f_em, f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var;
+	double cil, cih;
 	double pc[4];
 	double g[3];
 } bcf_p1rst_t;
@@ -25,12 +26,13 @@ extern "C" {
 	void bcf_p1_init_prior(bcf_p1aux_t *ma, int type, double theta);
 	void bcf_p1_init_subprior(bcf_p1aux_t *ma, int type, double theta);
 	void bcf_p1_destroy(bcf_p1aux_t *ma);
-	int bcf_p1_cal(bcf1_t *b, bcf_p1aux_t *ma, bcf_p1rst_t *rst);
+	int bcf_p1_cal(const bcf1_t *b, bcf_p1aux_t *ma, bcf_p1rst_t *rst);
 	int bcf_p1_call_gt(const bcf_p1aux_t *ma, double f0, int k);
 	void bcf_p1_dump_afs(bcf_p1aux_t *ma);
 	int bcf_p1_read_prior(bcf_p1aux_t *ma, const char *fn);
 	long double bcf_p1_cal_g3(bcf_p1aux_t *p1a, double g[3]);
 	int bcf_p1_set_n1(bcf_p1aux_t *b, int n1);
+	void bcf_p1_set_folded(bcf_p1aux_t *p1a); // only effective when set_n1() is not called
 
 #ifdef __cplusplus
 }