X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=debian%2Fcontrol;fp=debian%2Fcontrol;h=0020fc580ef91623c1afcb0f78e961b35e8e933f;hp=0000000000000000000000000000000000000000;hb=b78a63d3c38fa688edd00d7b506512989c5e92cf;hpb=b27e00385f41769d03a8cca4dbd71275fc9fa906

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+Source: samtools
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy@debian.org>
+Build-Depends: debhelper (>= 7), cdbs, libncurses5-dev, zlib1g-dev
+Standards-Version: 3.8.2
+Homepage: http://samtools.sourceforge.net
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/samtools/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/samtools/trunk/
+
+Package: samtools
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: processing sequence alignments in SAM and BAM formats
+ Samtools is a set of utilities that manipulate nucleotide sequence alignments
+ in the BAM format. It imports from and exports to the SAM (Sequence
+ Alignment/Map) format, does sorting, merging and indexing, and allows to
+ retrieve reads in any regions swiftly. It is designed to work on a stream, and
+ is able to open a BAM (not SAM) file on a remote FTP server.
+
+Package: libbam-dev
+Architecture: any
+Section: libdevel
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: manipulates nucleotide sequence alignments in BAM or SAM format 
+ The BAM library provides I/O and various operations on manipulating nucleotide
+ sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence
+ Alignment/Map) format. It now supports importing from or exporting to TAM,
+ sorting, merging, generating pileup, and quickly retrieval of reads overlapped
+ with a specified region.