X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=debian%2Fcontrol;h=82e03de4c7dc0e086ec35a1fd98b3109263fd01b;hp=0020fc580ef91623c1afcb0f78e961b35e8e933f;hb=2347ad62090e036841008e054c234868e21f7a80;hpb=b78a63d3c38fa688edd00d7b506512989c5e92cf diff --git a/debian/control b/debian/control index 0020fc5..82e03de 100644 --- a/debian/control +++ b/debian/control @@ -1,24 +1,25 @@ Source: samtools Section: science Priority: optional -Maintainer: Debian-Med Packaging Team +Maintainer: Debian Med Packaging Team DM-Upload-Allowed: yes Uploaders: Charles Plessy -Build-Depends: debhelper (>= 7), cdbs, libncurses5-dev, zlib1g-dev -Standards-Version: 3.8.2 +Build-Depends: debhelper (>= 8), cdbs, quilt, libncurses5-dev, zlib1g-dev +Standards-Version: 3.9.2 Homepage: http://samtools.sourceforge.net -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/samtools/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/samtools/trunk/ +Vcs-Browser: http://git.debian.org/?p=debian-med/samtools.git +Vcs-Git: git://git.debian.org/debian-med/samtools.git Package: samtools Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} +Suggests: python Description: processing sequence alignments in SAM and BAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments - in the BAM format. It imports from and exports to the SAM (Sequence - Alignment/Map) format, does sorting, merging and indexing, and allows to - retrieve reads in any regions swiftly. It is designed to work on a stream, and - is able to open a BAM (not SAM) file on a remote FTP server. + in the binary BAM format. It imports from and exports to the ascii SAM + (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows + to retrieve reads in any regions swiftly. It is designed to work on a stream, + and is able to open a BAM (not SAM) file on a remote FTP or HTTP server. Package: libbam-dev Architecture: any @@ -27,6 +28,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Description: manipulates nucleotide sequence alignments in BAM or SAM format The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence - Alignment/Map) format. It now supports importing from or exporting to TAM, + Alignment/Map) format. It now supports importing from or exporting to SAM, sorting, merging, generating pileup, and quickly retrieval of reads overlapped with a specified region.