X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=debian%2Frules;h=3605b20bc981cf33522c4e01119f03acea2a3bd0;hp=ac35c570acc45407aba80341e83751426b706ba5;hb=a8ea86b6acaafbfa2108c4cc047ae3fdd6385488;hpb=67801bf17aa6495879da63ce77a2014759fabc16 diff --git a/debian/rules b/debian/rules index ac35c57..3605b20 100755 --- a/debian/rules +++ b/debian/rules @@ -8,5 +8,13 @@ CFLAGS += -fPIC DEB_MAKE_BUILD_TARGET = all all-recur razip lib DEB_MAKE_CHECK_TARGET = -C examples all +DEB_DH_BUILDDEB_ARGS = -- -Z=bzip2 + clean:: - $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg + $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf + +binary-install/samtools:: + install -m 644 bcftools/README $(CURDIR)/debian/samtools/usr/share/doc/samtools/README.bcftools + +binary-fixup/samtools:: + sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py