X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=debian%2Frules;h=40822dde3cc5cb3b3b51edba4b3b353a87a2d820;hp=f5aaa941ac480eca83e1755e4d647648bbbbbedd;hb=85bb95099e58e20cc03456b7528248f7baed4db4;hpb=a1eac05d13dd41701ccb55e6471417a899563b19 diff --git a/debian/rules b/debian/rules index f5aaa94..40822dd 100755 --- a/debian/rules +++ b/debian/rules @@ -9,7 +9,11 @@ DEB_MAKE_BUILD_TARGET = all all-recur razip lib DEB_MAKE_CHECK_TARGET = -C examples all clean:: - $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg + $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf + +binary-install/samtools:: + install -m 644 bcftools/README $(CURDIR)/debian/samtools/usr/share/doc/samtools/README.bcftools + ln -s samtools.1.gz $(CURDIR)/debian/samtools/usr/share/man/man1/bcftools.1.gz binary-fixup/samtools:: sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py