X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=debian%2Frules;h=93bf3aa3c1166305dfd02400d4dfe366ec9d2f79;hp=ee5c351837f5e41fbfb82fd3c62be5d5d0d7fb61;hb=e582623cf8c4778c7dc792318635821d3c494b0d;hpb=d363084f0412f3bcdeb0304aeb0974c9a10c7649

diff --git a/debian/rules b/debian/rules
index ee5c351..93bf3aa 100755
--- a/debian/rules
+++ b/debian/rules
@@ -7,3 +7,15 @@ CFLAGS += -fPIC
 
 DEB_MAKE_BUILD_TARGET = all all-recur razip lib
 DEB_MAKE_CHECK_TARGET = -C examples all
+
+DEB_DH_BUILDDEB_ARGS = -- -Z=bzip2
+
+clean::
+	$(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf
+
+binary-install/samtools::
+	install -m 644 bcftools/README $(CURDIR)/debian/samtools/usr/share/doc/samtools/README.bcftools
+	ln -s samtools.1.gz $(CURDIR)/debian/samtools/usr/share/man/man1/bcftools.1.gz
+
+binary-fixup/samtools::
+	sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py