X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=debian%2Frules;h=e4a25660cd642d4782f6dd5d2b8e1932f56d641b;hp=ee5c351837f5e41fbfb82fd3c62be5d5d0d7fb61;hb=aa08abe5f0b84ee0dd3491f00fe357d661c08e0c;hpb=4836a5b9b0b370a259514b52a9321dc1dd19e08d

diff --git a/debian/rules b/debian/rules
index ee5c351..e4a2566 100755
--- a/debian/rules
+++ b/debian/rules
@@ -2,8 +2,21 @@
 
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/makefile.mk
+include /usr/share/cdbs/1/rules/patchsys-quilt.mk
 
 CFLAGS += -fPIC
 
 DEB_MAKE_BUILD_TARGET = all all-recur razip lib
 DEB_MAKE_CHECK_TARGET = -C examples all
+
+DEB_DH_BUILDDEB_ARGS = -- -Z=xz
+
+clean::
+	$(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf
+
+binary-install/samtools::
+	install -m 644 bcftools/README $(CURDIR)/debian/samtools/usr/share/doc/samtools/README.bcftools
+	ln -s samtools.1.gz $(CURDIR)/debian/samtools/usr/share/man/man1/bcftools.1.gz
+
+binary-fixup/samtools::
+	sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py