X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=debian%2Frules;h=f5aaa941ac480eca83e1755e4d647648bbbbbedd;hp=451ca815bffaafd7ad0ecbfb11dedde97a500fd4;hb=4dd37bb88d4feb45d3fcfdc655ea75f72ea2aacb;hpb=b78a63d3c38fa688edd00d7b506512989c5e92cf

diff --git a/debian/rules b/debian/rules
index 451ca81..f5aaa94 100755
--- a/debian/rules
+++ b/debian/rules
@@ -3,5 +3,13 @@
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/makefile.mk
 
+CFLAGS += -fPIC
+
 DEB_MAKE_BUILD_TARGET = all all-recur razip lib
 DEB_MAKE_CHECK_TARGET = -C examples all
+
+clean::
+	$(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg
+
+binary-fixup/samtools::
+	sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py