X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=errmod.h;h=32c07b67b625924230689fca1d16da4f49e5938b;hp=e3e9a90540cee5a78bb603956db20e7861555c2d;hb=ced7709f121a00d5049d99ee8576037994aab1d1;hpb=62781a2daa24d74a3c590e2669fad1fa7cabf933

diff --git a/errmod.h b/errmod.h
index e3e9a90..32c07b6 100644
--- a/errmod.h
+++ b/errmod.h
@@ -12,6 +12,13 @@ typedef struct {
 
 errmod_t *errmod_init(float depcorr);
 void errmod_destroy(errmod_t *em);
+
+/*
+	n: number of bases
+	m: maximum base
+	bases[i]: qual:6, strand:1, base:4
+	q[i*m+j]: phred-scaled likelihood of (i,j)
+ */
 int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q);
 
 #endif