X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=misc%2FMakefile;fp=misc%2FMakefile;h=2d7139d4e8a5c62068afb381f47493f8408bc681;hp=4404cccd1e8169b1c3a40538099a4e9d9285cfa8;hb=cb12a866906ec4ac644de0e658679261c82ab098;hpb=3a3b72190c04cb076438f5027e13fcf5ddee77be

diff --git a/misc/Makefile b/misc/Makefile
index 4404ccc..2d7139d 100644
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -1,6 +1,6 @@
 CC=			gcc
 CXX=		g++
-CFLAGS=		-g -Wall -O2 -m64 #-arch ppc
+CFLAGS=		-g -Wall #-O2 #-m64 #-arch ppc
 CXXFLAGS=	$(CFLAGS)
 DFLAGS=		-D_FILE_OFFSET_BITS=64
 OBJS=		
@@ -27,6 +27,9 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 
 lib:
 
+afs2:afs2.o
+		$(CC) $(CFLAGS) -o $@ afs2.o -lm -lz -L.. -lbam
+
 wgsim:wgsim.o
 		$(CC) $(CFLAGS) -o $@ wgsim.o -lm
 
@@ -48,7 +51,10 @@ maq2sam-long:maq2sam.c
 md5fa.o:md5.h md5fa.c
 		$(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
 
+afs2.o:afs2.c ../bam.h
+		$(CC) $(CFLAGS) -c -I.. -o $@ afs2.c
+
 cleanlocal:
-		rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a
+		rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a
 
 clean:cleanlocal-recur