X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=blobdiff_plain;f=sam_header.c;fp=sam_header.c;h=f49b2d463cff3301ee9351ec956a69d6d2c185c4;hp=05d75deb2c4ced014c6ae5f8612260d05b34660a;hb=e42445c748ed193f8d0a4277a844fa848f30c132;hpb=fa217aa47313e2535cbd2d4bb034cfd405162662

diff --git a/sam_header.c b/sam_header.c
index 05d75de..f49b2d4 100644
--- a/sam_header.c
+++ b/sam_header.c
@@ -563,6 +563,7 @@ void *sam_header_parse2(const char *headerText)
     const char *text;
     char *buf=NULL;
     size_t nbuf = 0;
+	int tovalidate = 0;
 
     if ( !headerText )
 		return 0;
@@ -571,7 +572,7 @@ void *sam_header_parse2(const char *headerText)
     while ( (text=nextline(&buf, &nbuf, text)) )
     {
         hline = sam_header_line_parse(buf);
-        if ( hline && sam_header_line_validate(hline) )
+        if ( hline && (!tovalidate || sam_header_line_validate(hline)) )
             // With too many (~250,000) reference sequences the header parsing was too slow with list_append.
             hlines = list_append_to_end(hlines, hline);
         else