updated build targets to include bam_calnh.c

diff --git a/Makefile b/Makefile
index db183330d1fb76ce4fa0d17d8dab65afdfbeb65a..7569e27131c81a6c56d713d9a4e79951e63b6c25 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -8,7 +8,7 @@ LOBJS=          bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
 AOBJS=         bam_tview.o bam_plcmd.o sam_view.o      \
                        bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o     \
                        bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
-                       cut_target.o phase.o bam2depth.o
+                       cut_target.o phase.o bam2depth.o bam_calnh.o
 PROG=          samtools
 INCLUDES=      -I.
 SUBDIRS=       . bcftools misc
@@ -49,6 +49,10 @@ razip:razip.o razf.o $(KNETFILE_O)
 bgzip:bgzip.o bgzf.o $(KNETFILE_O)
                $(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o $(KNETFILE_O) -lz
 
+bam_calnh:lib-recur $(AOBJS)
+               rm -fr bam_calnh.o; \
+               $(CC) $(CFLAGS) -D_STANDALONE -o $@ bam_calnh.c -lbam -lm
+
 razip.o:razf.h
 bam.o:bam.h razf.h bam_endian.h kstring.h sam_header.h
 sam.o:sam.h bam.h