+samtools (0.1.8-1) unstable; urgency=low
+
+ * New upstream release.
+ * Updated the VCS fields to the current Git repository (debian/control).
+ * Install python scripts in usr/share/samtools, and suggest python
+ (debian/samtools.install, debian/rules, debian/control).
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.0
+ (debian/control, no changes needed).
+
+ -- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
+
samtools (0.1.7a~dfsg-1) unstable; urgency=low
* New upstream release: new script sam2vcf.pl, and many other changes.
Source: samtools
Section: science
Priority: optional
-Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
+Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Build-Depends: debhelper (>= 7), cdbs, libncurses5-dev, zlib1g-dev
-Standards-Version: 3.8.3
+Standards-Version: 3.9.0
Homepage: http://samtools.sourceforge.net
Vcs-Browser: http://git.debian.org/?p=debian-med/samtools.git
Vcs-Git: git://git.debian.org/debian-med/samtools.git
Package: samtools
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests: python
Description: processing sequence alignments in SAM and BAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments
in the binary BAM format. It imports from and exports to the ascii SAM
clean::
$(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg
+
+binary-fixup/samtools::
+ sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py
razip usr/bin
samtools usr/bin
misc/*.pl usr/share/samtools
+misc/*.py usr/share/samtools
misc/wgsim usr/lib/samtools
misc/maq2sam-long usr/lib/samtools
misc/maq2sam-short usr/lib/samtools