-diff --git a/Makefile b/Makefile
-index db18333..926059b 100644
---- a/Makefile
-+++ b/Makefile
+Index: samtools.debian/Makefile
+===================================================================
+--- samtools.debian.orig/Makefile 2012-12-19 14:23:16.799622129 -0800
++++ samtools.debian/Makefile 2012-12-19 14:23:21.839621951 -0800
@@ -1,5 +1,5 @@
CC= gcc
-CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
+CFLAGS= -g -Wall -O2 -fPIC #-m64 #-arch ppc
DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
KNETFILE_O= knetfile.o
- LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
-@@ -35,13 +35,13 @@ all:$(PROG)
+ LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam_view.o sam.o bam_index.o \
+@@ -36,13 +36,13 @@
.PHONY:all lib clean cleanlocal
.PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur
razip:razip.o razf.o $(KNETFILE_O)
$(CC) $(CFLAGS) -o $@ razf.o razip.o $(KNETFILE_O) -lz
-@@ -75,8 +75,9 @@ faidx_main.o:faidx.h razf.h
+@@ -76,8 +76,9 @@
libbam.1.dylib-local:$(LOBJS)
libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz
--- /dev/null
+Index: samtools.debian/Makefile
+===================================================================
+--- samtools.debian.orig/Makefile 2012-12-19 15:16:35.947509197 -0800
++++ samtools.debian/Makefile 2012-12-19 15:18:01.359506182 -0800
+@@ -2,15 +2,17 @@
+ CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
+ DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
+ KNETFILE_O= knetfile.o
+-LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
+- bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o \
+- $(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o
+-AOBJS= bam_tview.o bam_plcmd.o sam_view.o \
+- bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
+- bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
+- cut_target.o phase.o bam2depth.o
++LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam_view.o sam.o bam_index.o \
++ bam_mate.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o \
++ bedidx.o $(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o \
++ kprobaln.o bam_cat.o errmod.o phase.o bam_rmdup.o bam_rmdupse.o bam_stat.o \
++ cut_target.o bam2depth.o bam_plcmd.o bam2bcf.o bam2bcf_indel.o \
++ bcftools/bcf.o bcftools/bcfutils.o bcftools/fet.o sample.o
++AOBJS= bam_tview.o \
++ bam_color.o \
++ bamtk.o kaln.o
+ PROG= samtools
+-INCLUDES= -I.
++INCLUDES= -I. -Ibcftools
+ SUBDIRS= . bcftools misc
+ LIBPATH=
+ LIBCURSES= -lcurses # -lXCurses