From: Charles Plessy Date: Mon, 1 Nov 2010 11:04:01 +0000 (+0900) Subject: # Updated and reformatted debian/copyright according to latest DEP-5 draft. X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=commitdiff_plain;h=2adb485e0042dff362c6f5159c3e4cf6f4787b61 # Updated and reformatted debian/copyright according to latest DEP-5 draft. --- diff --git a/debian/copyright b/debian/copyright index 67f3481..48b777e 100644 --- a/debian/copyright +++ b/debian/copyright @@ -1,119 +1,104 @@ -Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. - - -Name : SAMtools -Contact : SAMtools mailing list -Source : http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.7a.tar.bz2 - - -Copyright : © 2008–2010, Genome Research Ltd. (GRL) -License : MIT - - Permission is hereby granted, free of charge, to any person obtaining a copy - of this software and associated documentation files (the "Software"), to deal - in the Software without restriction, including without limitation the rights - to use, copy, modify, merge, publish, distribute, sublicense, and/or sell - copies of the Software, and to permit persons to whom the Software is - furnished to do so, subject to the following conditions: - - The above copyright notice and this permission notice shall be included in - all copies or substantial portions of the Software. - - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR - IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, - FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE - AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER - LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN - THE SOFTWARE. - -Files : bcftools/bcf.h -Copyright : © 2010 Broad Institute -License : MIT +Format: DEP-5 (beta) +Source: http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.9.tar.bz2 +Copyright: © 2008–2010, Genome Research Ltd. (GRL) +License: MIT + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. + +Files: bcftools/bcf.h +Copyright: © 2010 Broad Institute +License: MIT Files: misc/export2sam.pl -Copyright : © 2008–2009, Genome Research Ltd. -Copyright : © 2010 Illumina, Inc. -License : MIT - - -Files : bgzf.*, bgzip.c -Copyright : © 2008 Broad Institute / Massachusetts Institute of Technology -License : MIT - - -Files : razf.* -Name : RAZF : Random Access compressed(Z) File -Copyright : 2008, Jue Ruan , Heng Li -License : Similar to NetBSD license. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND - ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE - FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS - OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) - HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY - OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF - SUCH DAMAGE. - - -Files : misc/md5.* -License : - - This code implements the MD5 message-digest algorithm. - The algorithm is due to Ron Rivest. This code was - written by Colin Plumb in 1993, no copyright is claimed. - This code is in the public domain; do with it what you wish. - - Equivalent code is available from RSA Data Security, Inc. - This code has been tested against that, and is equivalent, - except that you don't need to include two pages of legalese - with every copy. - - To compute the message digest of a chunk of bytes, declare an - MD5Context structure, pass it to MD5Init, call MD5Update as - needed on buffers full of bytes, and then call MD5Final, which - will fill a supplied 16-byte array with the digest. - - -Files : win32/xcurses.h -License : Public Domain - - This file is part of PDCurses (http://pdcurses.sourceforge.net/), - which is in the public domain. - - -Files : win32/z*.h -Copyright : © 1995-2005 Jean-loup Gailly and Mark Adler -License : zlib - - This software is provided 'as-is', without any express or implied - warranty. In no event will the authors be held liable for any damages - arising from the use of this software. - - Permission is granted to anyone to use this software for any purpose, - including commercial applications, and to alter it and redistribute it - freely, subject to the following restrictions: - - 1. The origin of this software must not be misrepresented; you must not - claim that you wrote the original software. If you use this software - in a product, an acknowledgment in the product documentation would be - appreciated but is not required. - 2. Altered source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - 3. This notice may not be removed or altered from any source distribution. - - Jean-loup Gailly Mark Adler - jloup@gzip.org madler@alumni.caltech.edu +Copyright: © 2008–2009, Genome Research Ltd. +Copyright: © 2010 Illumina, Inc. +License: MIT + +Files: bgzf.*, bgzip.c +Copyright: © 2008 Broad Institute / Massachusetts Institute of Technology +License: MIT + + +Files: razf.* +Name: RAZF : Random Access compressed(Z) File +Copyright: 2008, Jue Ruan , Heng Li +License: Similar to NetBSD license. + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + . + THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + SUCH DAMAGE. + +Files: misc/md5.* +License: + This code implements the MD5 message-digest algorithm. + The algorithm is due to Ron Rivest. This code was + written by Colin Plumb in 1993, no copyright is claimed. + This code is in the public domain; do with it what you wish. + . + Equivalent code is available from RSA Data Security, Inc. + This code has been tested against that, and is equivalent, + except that you don't need to include two pages of legalese + with every copy. + . + To compute the message digest of a chunk of bytes, declare an + MD5Context structure, pass it to MD5Init, call MD5Update as + needed on buffers full of bytes, and then call MD5Final, which + will fill a supplied 16-byte array with the digest. + +Files: win32/xcurses.h +License: Public Domain + This file is part of PDCurses (http://pdcurses.sourceforge.net/), + which is in the public domain. + +Files: win32/z*.h +Copyright: © 1995-2005 Jean-loup Gailly and Mark Adler +License: zlib + This software is provided 'as-is', without any express or implied + warranty. In no event will the authors be held liable for any damages + arising from the use of this software. + . + Permission is granted to anyone to use this software for any purpose, + including commercial applications, and to alter it and redistribute it + freely, subject to the following restrictions: + . + 1. The origin of this software must not be misrepresented; you must not + claim that you wrote the original software. If you use this software + in a product, an acknowledgment in the product documentation would be + appreciated but is not required. + 2. Altered source versions must be plainly marked as such, and must not be + misrepresented as being the original software. + 3. This notice may not be removed or altered from any source distribution. + . + Jean-loup Gailly Mark Adler + jloup@gzip.org madler@alumni.caltech.edu