From: Charles Plessy Date: Wed, 18 Nov 2009 05:31:10 +0000 (+0900) Subject: Uploaded package after misc. improvements. X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=commitdiff_plain;h=81c994d0666e86a8a8f9107e8a188860ec98ba58 Uploaded package after misc. improvements. - Updated debian/copyright. - Polished and install new razip manual page. - Better clean the example directory to make the source package buildable twice in a row. --- diff --git a/debian/changelog b/debian/changelog index fc387c8..96ad453 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,9 +1,12 @@ -samtools (0.1.7a~dfsg-1) UNRELEASED; urgency=low +samtools (0.1.7a~dfsg-1) unstable; urgency=low * New upstream release: new script sam2vcf.pl, and many other changes. * Package converted to the format ‘3.0 (quilt)’ (debian/source/format). + * Wrote a manual page for razip (debian/razip.1). + * Better clean the example directory to make the source package + buildable twice in a row (debian/rules). - -- Charles Plessy Mon, 16 Nov 2009 14:25:41 +0900 + -- Charles Plessy Tue, 17 Nov 2009 21:38:24 +0900 samtools (0.1.6~dfsg-1) unstable; urgency=low diff --git a/debian/copyright b/debian/copyright index 0aa176c..d5d88d7 100644 --- a/debian/copyright +++ b/debian/copyright @@ -3,7 +3,7 @@ Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. Name : SAMtools Contact : SAMtools mailing list -Source : http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.7.tar.bz2 +Source : http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.7a.tar.bz2 Copyright : © 2008–2009, Genome Research Ltd. diff --git a/debian/razip.1 b/debian/razip.1 index 5f0abc7..aa06283 100644 --- a/debian/razip.1 +++ b/debian/razip.1 @@ -1,4 +1,5 @@ .\" Generated by help2man 1.36 and edited later with vi. +.\" This manual page was forwarded upstream on November 17th, 2009. .TH RAZIP "1" "November 2009" "razip " "Bioinformatics tools" .SH NAME razip \- Compress and decompress files in RAZip format diff --git a/debian/rules b/debian/rules index ee5c351..ac35c57 100755 --- a/debian/rules +++ b/debian/rules @@ -7,3 +7,6 @@ CFLAGS += -fPIC DEB_MAKE_BUILD_TARGET = all all-recur razip lib DEB_MAKE_CHECK_TARGET = -C examples all + +clean:: + $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg diff --git a/debian/samtools.manpages b/debian/samtools.manpages index 8c4cbfe..18d2896 100644 --- a/debian/samtools.manpages +++ b/debian/samtools.manpages @@ -1 +1,2 @@ samtools.1 +debian/razip.1