From: Charles Plessy Date: Mon, 11 Jul 2011 11:26:09 +0000 (+0900) Subject: New upstream release (no new copyright holder nor license statement). X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=samtools.git;a=commitdiff_plain;h=d4f09f4b4e8db48379556de31e6afd22f7979fac;hp=e2bd290b8643f0a728c282a8b825392307750210 New upstream release (no new copyright holder nor license statement). --- diff --git a/debian/changelog b/debian/changelog index a2d32ce..e62e68b 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +samtools (0.1.17-1) UNRELEASED; urgency=low + + * New upstream release 0.1.17 (6 July, 2011). + + -- Charles Plessy Mon, 11 Jul 2011 20:22:01 +0900 + samtools (0.1.16-1) unstable; urgency=low * New upstream release, implementing SAM Spec v1.4. diff --git a/debian/copyright b/debian/copyright index 4fc8462..d46aaef 100644 --- a/debian/copyright +++ b/debian/copyright @@ -1,61 +1,48 @@ Format: http://dep.debian.net/deps/dep5/ -Source: http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.16.tar.bz2 +Source: http://sourceforge.net/projects/samtools/files/samtools/0.1.17/samtools-0.1.17.tar.bz2 Files: * -Copyright: © 2008–2010, Genome Research Ltd. (GRL) +Copyright: © 2008–2010, Genome Research Ltd. (GRL) License: MIT -License: MIT - Permission is hereby granted, free of charge, to any person obtaining a copy - of this software and associated documentation files (the "Software"), to deal - in the Software without restriction, including without limitation the rights - to use, copy, modify, merge, publish, distribute, sublicense, and/or sell - copies of the Software, and to permit persons to whom the Software is - furnished to do so, subject to the following conditions: - . - The above copyright notice and this permission notice shall be included in - all copies or substantial portions of the Software. - . - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR - IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, - FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE - AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER - LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN - THE SOFTWARE. -Files: kprobaln.h, kprobaln.c +Files: kprobaln.h kprobaln.c Copyright: © 2003-2006, 2008-2010, by Heng Li License: MIT + Files: bcftools/bcf.h Copyright: © 2010 Broad Institute License: MIT -Files: misc/export2sam.pl, bam_cat.c -Copyright: © 2008–2009, Genome Research Ltd. + +Files: misc/export2sam.pl bam_cat.c Copyright: © 2010 Illumina, Inc. License: MIT -Files: bgzf.*, bgzip.c + +Files: bgzf.* bgzip.c Copyright: © 2008 Broad Institute / Massachusetts Institute of Technology License: MIT + Files: khash.h Copyright: © 2008, 2009, 2011 by Attractive Chaos License: MIT + Files: bcftools/kmin.? Copyright: © 2008, 2010 by Attractive Chaos License: MIT + Files: knetfile.c Copyright: © 2008 by Genome Research Ltd (GRL). - 2010 by Attractive Chaos + 2010 by Attractive Chaos License: MIT + Files: razf.* -Name: RAZF : Random Access compressed(Z) File Copyright: 2008, Jue Ruan , Heng Li License: NetBSD-similar Redistribution and use in source and binary forms, with or without @@ -78,6 +65,8 @@ License: NetBSD-similar LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +Name: RAZF : Random Access compressed(Z) File + Files: misc/md5.* Copyright: no copyright is claimed @@ -97,12 +86,14 @@ License: MD5-fourmilab needed on buffers full of bytes, and then call MD5Final, which will fill a supplied 16-byte array with the digest. + Files: win32/xcurses.h Copyright: Public Domain License: public-domain This file is part of PDCurses (http://pdcurses.sourceforge.net/), which is in the public domain. + Files: win32/z*.h Copyright: © 1995-2005 Jean-loup Gailly and Mark Adler License: zlib @@ -124,3 +115,24 @@ License: zlib . Jean-loup Gailly Mark Adler jloup@gzip.org madler@alumni.caltech.edu + + +License: MIT + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. +