From 0dc732a62db94bbd7b88c2c8f6992f367c792600 Mon Sep 17 00:00:00 2001
From: Henry Amrhein <hamrhein@caltech.edu>
Date: Fri, 21 Dec 2012 12:35:38 -0800
Subject: [PATCH] updated build targets to include bam_calnh.c

---
 Makefile | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index db18333..7569e27 100644
--- a/Makefile
+++ b/Makefile
@@ -8,7 +8,7 @@ LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\
 AOBJS=		bam_tview.o bam_plcmd.o sam_view.o	\
 			bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o	\
 			bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
-			cut_target.o phase.o bam2depth.o
+			cut_target.o phase.o bam2depth.o bam_calnh.o
 PROG=		samtools
 INCLUDES=	-I.
 SUBDIRS=	. bcftools misc
@@ -49,6 +49,10 @@ razip:razip.o razf.o $(KNETFILE_O)
 bgzip:bgzip.o bgzf.o $(KNETFILE_O)
 		$(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o $(KNETFILE_O) -lz
 
+bam_calnh:lib-recur $(AOBJS)
+		rm -fr bam_calnh.o; \
+		$(CC) $(CFLAGS) -D_STANDALONE -o $@ bam_calnh.c -lbam -lm
+
 razip.o:razf.h
 bam.o:bam.h razf.h bam_endian.h kstring.h sam_header.h
 sam.o:sam.h bam.h
-- 
2.30.2