Release 0.2.4 (10 April, 2011) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable changes: * Give an error if the index file is older than the data file. * Avoid a segfault given flawed input. * Added Python APIs contributed by Hyeshik Chang. The new APIs do not bind to the dynamic library and are reported to be faster. Pysam also comes with a tabix binding. * Added option "-r" for efficient header replacement. * Added BED support. * Synchronized the BGZF library between tabix and samtools. (0.2.4: 10 April 2011, r949) Beta Release 0.2.3 (8 December, 2010) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable changes: * Fixed a minor bug where the first record in a headerless file may be missed. * Added an option to print header lines. * Fixed a rare bug which may occasionally happen when retrieving data from a region without any records. * Enhanced error reporting. * Fixed a bug in bgzip which may delete the original file even if not intended. (0.2.3: 8 December 2010, r876) Beta Release 0.2.2 (28 June, 2010) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable changes: * Dropped the VCF3 support. Added VCF4 support. * Avoided the function name collision with samtools. (0.2.2: 28 June 2010, r603) Beta Release 0.2.1 (3 June, 2010) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable changes: * Allow shared library to be compiled. Added python binding to the shared library. (0.2.1: 3 June 2010, r582) Beta Release 0.2.0 (11 May, 2010) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable changes: * Fixed an issue for random access given an interval end larger than 2^29. * Updated the Java binding. * Added a Perl module using XS. * Improved the C APIs. (0.2.0: 11 May 2010, r574) Beta Release 0.1.6 (9 May, 2010) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable changes: * Improved backward compatibility. Release 0.1.5 does not work with the buggy index file generated by 0.1.2. * Fixed a bug in building linear index. The bug does not affect the results, only affects efficiency in rare cases. * Reduced the number of seek calls given an index generated by old version of tabix. * Added new APIs for retrieving data via an iterator. The old callback APIs are not changed, although internally it uses iterator to retrieve data. I am trying to freeze tabix. I just hope I am committing new bugs. (0.1.6: 9 May 2010, r563) Beta Release 0.1.5 (5 May, 2010) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable changes: * Clarified that tabix is released under MIT/X11. * Improved the robustness of indexing and retrieval. * Reduced the number of seek calls when the specified region starts from a 16kb block with no data. The index format is the same, but the content is changed a little. (0.1.5: 5 May 2010, r560)