X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=tabix.git;a=blobdiff_plain;f=Makefile;h=9c8e9174c443990353ed1576c5d8cdc5ab399069;hp=a51c1757ad139d7135da8ad42a8b71a01b66c04d;hb=HEAD;hpb=c70c92b7a385548d8e670638a93a083401f49e4d

diff --git a/Makefile b/Makefile
index a51c175..9c8e917 100644
--- a/Makefile
+++ b/Makefile
@@ -1,7 +1,7 @@
 CC=			gcc
-CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
-DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
-LOBJS=		bgzf.o kstring.o knetfile.o index.o
+CFLAGS=		-g -Wall -O2 -fPIC #-m64 #-arch ppc
+DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE
+LOBJS=		bgzf.o kstring.o knetfile.o index.o bedidx.o
 AOBJS=		main.o
 PROG=		tabix bgzip
 INCLUDES=
@@ -28,11 +28,17 @@ all:$(PROG)
 
 lib:libtabix.a
 
+libtabix.so.1:$(LOBJS)
+		$(CC) -shared -Wl,-soname,libtabix.so -o $@ $(LOBJS) -lc -lz
+
+libtabix.1.dylib:$(LOBJS)
+		libtool -dynamic $(LOBJS) -o $@ -lc -lz
+
 libtabix.a:$(LOBJS)
-		$(AR) -cru $@ $(LOBJS)
+		$(AR) -csru $@ $(LOBJS)
 
 tabix:lib $(AOBJS)
-		$(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) -lz -L. -ltabix
+		$(CC) $(CFLAGS) -o $@ $(AOBJS) -L. -ltabix -lm $(LIBPATH) -lz
 
 bgzip:bgzip.o bgzf.o knetfile.o
 		$(CC) $(CFLAGS) -o $@ bgzip.o bgzf.o knetfile.o -lz
@@ -46,11 +52,12 @@ bgzf.o:bgzf.h knetfile.h
 index.o:bgzf.h tabix.h khash.h ksort.h kstring.h
 main.o:tabix.h kstring.h bgzf.h
 bgzip.o:bgzf.h
+bedidx.o:kseq.h khash.h
 
 tabix.pdf:tabix.tex
 		pdflatex tabix.tex
 
 cleanlocal:
-		rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a tabix.aux tabix.log tabix.pdf *.class
+		rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
 
 clean:cleanlocal-recur