X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=tabix.git;a=blobdiff_plain;f=tabix.1;h=aa6dc75c9f0e7a4a14e93f27b5b45bb39b8c3eb3;hp=4b5eea25057be28b6a7fa749ef2272a14ebfb313;hb=0a3bf89715283e4d322d28ba4147e987e3477ee3;hpb=e6ba78ac1e0c41c4256dd385895352236d80426a diff --git a/tabix.1 b/tabix.1 index 4b5eea2..aa6dc75 100644 --- a/tabix.1 +++ b/tabix.1 @@ -69,8 +69,8 @@ are all stored in the index file and thus not used in data retrieval. [1] Column of start chromosomal position. [4] .TP .BI "-e " INT -Column of end chromosomal position. The end column can be the same as -start column, [5] +Column of end chromosomal position. The end column can be the same as the +start column. [5] .TP .BI "-S " INT Skip first INT lines in the data file. [0] @@ -84,7 +84,7 @@ rather than 1-based. .RE .SH EXAMPLE -grep -v ^"#" unsorted.gff | sort -k1,1 -k4,4n | bgzip -c > sorted.gff.gz; +(grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz; tabix -p gff sorted.gff.gz;