Imported Upstream version 0.2.5

diff --git a/bedidx.c b/bedidx.c
index 92978318d4ccfbbabeeddd150458245f669062d8..722877dcc2aa1d414460c328e6e022a22befecfe 100644 (file)
--- a/bedidx.c
+++ b/bedidx.c
@@ -4,6 +4,9 @@
 #include <stdio.h>
 #include <zlib.h>
 
+#include "ksort.h"
+KSORT_INIT_GENERIC(uint64_t)
+
 #include "kseq.h"
 KSTREAM_INIT(gzFile, gzread, 8192)
 
@@ -53,6 +56,7 @@ void bed_index(void *_h)
                if (kh_exist(h, k)) {
                        bed_reglist_t *p = &kh_val(h, k);
                        if (p->idx) free(p->idx);
+                       ks_introsort(uint64_t, p->n, p->a);
                        p->idx = bed_index_core(p->n, p->a, &p->m);
                }
        }

diff --git a/main.c b/main.c
index 46642510d6dfdccf0ab5a628826f1fe9844ae310..364abe5ff6751b3ea4720f3d1a45a7dcd22d84d4 100644 (file)
--- a/main.c
+++ b/main.c
@@ -7,7 +7,7 @@
 #include "bgzf.h"
 #include "tabix.h"
 
-#define PACKAGE_VERSION "0.2.4 (r949)"
+#define PACKAGE_VERSION "0.2.5 (r964)"
 
 #define error(...) { fprintf(stderr,__VA_ARGS__); return -1; }