The Wold Lab

Caltech Biology|Bioinformatics Lab

Recent Wold Lab Publications
Publication lists for individual lab members can be seen on their personal web pages.

Title: Mapping and quantifying mammalian transcriptomes by RNA-seq.
Authors: Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B.
Published: Nature Methods, 2008 Jul;5(7):621-8. Epub 2008 May 30.

Title: Sequence census methods for functional genomics.
Authors: Wold B, Myers RM.
Published: Nature Methods. 2008 Jan;5(1):19-21. Epub 2007 Dec 19. Review.

Title: Genome-wide mapping of in vivo protein-DNA interactions.
Authors: Johnson DS, Mortazavi A, Myers RM, Wold B.
Published: Science, 2007 Jun 8;316(5830):1497-502. Epub 2007 May 31.

Title: Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks.
Authors: Hart CE, Mjolsness E, Wold BJ
Published: PLoS Comput Biol. 2006 Dec 22;2(12):e169.

Title: Spatiometabolic stratificiation of Shewanella oneidensis biofilms.
Authors: Teal TK, Lies DP, Wold BJ, Newman DK
Published:  Appl Environ Microbiol, 2006 Nov;72(11):7324-30. 

Title: Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire.
Authors: Mortazavi A, Thompson EC, Garcia ST, Myers RM, Wold B.
Published: Genome Research, 2006 Oct;16(10):1208-21. Epub 2006 Sep 8.

Title: Mining gene expression data by interpreting principal components.
Authors: Roden, JC, King, B, Trout D, Mortazavi, A, Wold, BJ, Hart CE
Published: BMC Bioinformatics, 2006 Apr 7;7:194.

Title: A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data.
Authors: Hart CE, Sharenbroich L, Bornstein BJ, Trout D, King B, Mjolsness E, Wold BJ
Published: Nucleic Acids Res. 2005 May 10;33(8):2580-94.

Title: Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations
Authors: Shapiro BE, Levchenko A, Meyerowitz EM, Wold BJ, Mjolsness ED
Published: Bioinformatics. 2003 Mar 22;19(5):677-8

Title: Significance and statistical errors in the analysis of DNA microarray data
Authors: Brody JP, Williams BA, Wold BJ, Quake SR
Published: Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12975-8.

Title: The bHLH regulator pMesogenin1 is required for maturation and segmentation of paraxial mesoderm
Authors: Yoon, JK and Wold, BW
Published: Genes and Development 14 (24): 3204-3214 Dec 15 2000

Title: MyoD(-/-) satellite cells in single-fiber culture are differentiation defective and MRF4 deficient
Authors: D. D. Cornelison, B. B. Olwin, M. A. Rudnicki and B. J. Wold
Published: Dev Biol 224 (2): 122-37 Aug 2000

Title: The bHLH class protein pMesogenin1 can specify paraxial mesoderm phenotypes
Authors: Yoon JK, Moon RT, Wold B
Published: Dev Biol 222 (2): 376-391 Jun 15 2000

Title: Coexpression to Coregulation: An Approach to Inferring Transcriptional Regulation among Gene Classes from Large-Scale Expression Data
Authors: E. Mjolsness, T. Mann, R. Castano and B. Wold
Published: Technical Report JPL-ICTR-99-4 1999

Title: p27Kip1 is expressed transiently in developing myotomes and enhances myogenesis
Authors: S. D. Zabludoff, M. Csete, R. Wagner, X. Yu and B. J. Wold
Published: Cell Growth Differ 9 (1): 1-11 Jan 1998

Title: Different MRF4 knockout alleles differentially disrupt Myf-5 expression: cis-regulatory interactions at the MRF4/Myf-5 locus
Authors: J. K. Yoon, E. N. Olson, H. H. Arnold and B. J. Wold
Published: Dev Biol 188 (2): 349-62 Aug 1997

Title: Single-cell analysis of regulatory gene expression in quiescent and activated mouse skeletal muscle satellite
Authors: D. D. Cornelison and B. J. Wold
Published: Dev Biol 191 (2): 270-283 Nov 1997

Title: Skeletal muscle determination and differentiation: story of a core regulatory network and its context
Authors: K. Yun and B. Wold
Published: Curr Opin Cell Biol 8 (6): 877-79 Dec 1996